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Exclusion of CARD15/NOD2 as a candidate susceptibility gene to psoriasis in the Italian population


European Journal of Dermatology. Volume 12, Number 6, 540-2, November - December 2002, Rapports d'investigature


Summary  

Author(s) : Paola BORGIANI, Laura VALLO, Maria Rosaria D'APICE, Emiliano GIARDINA, Sabina PUCCI, Francesca CAPON, Steven NISTICÒ, Sergio CHIMENTI, Francesco PALLONE, Giuseppe NOVELLI, Centro di Eccellenza per lo Studio del Rischio Genomico in Patologie Complesse Multifattoriali, Facoltà di Medicina, Università di Roma "Tor Vergata", Via Montpellier 1, 00133 Roma, Italy..

Summary : Psoriasis is a chronic inflammatory skin disorder showing multifactorial inheritance. Linkage studies have mapped disease susceptibility loci to several genomic regions, including the chromosome 16 interval that contains the CARD15/NOD2 gene. CARD15 has been involved in Crohn's Disease (CD) susceptibility and it has been hypothesised that it may also contribute to the pathogenesis of psoriasis. To test this hypothesis we studied the distribution of 3 CARD15 SNPs in an Italian case-control data set. We failed to observe any significant difference between patients and controls, thereby excluding the presence of a strong genetic association between CARD15 gene polymorphisms and psoriasis, in the Italian population.

Keywords : psoriasis, Crohn's Disease, CARD15, NOD2, genetic susceptibility, pyrosequencing.

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ARTICLE

Psoriasis (PSORS, OMIM #177900) is a chronic inflammatory skin disorder affecting approximately 2% of the Caucasian population [1]. The disease is characterized by skin lesions showing epidermal hyper proliferation, abnormal keratinocyte differentiation and infiltration of inflammatory elements [2]. Despite the established influence of several environmental factors, epidemiological data and twin studies have demonstrated a genetic basis for disease susceptibility [3, 4]. Moreover, associations with several HLA alleles have been repeatedly reported, suggesting the hypothesis that psoriasis may be a T-cell-mediated, autoimmune disorder [2]. Parametric and non-parametric linkage analyses have mapped a major psoriasis susceptibility region to chromosome 6p21 and several non-MHC loci [5]. One of such susceptibility regions was mapped to chromosome 16 [6], within the region containing the CARD15 (caspase recruitment domain) gene (previously named NOD2), which carries alleles associated to inflammatory bowel disease (IBD1, OMIM #266600) [7-11]). IBD is an autoimmune disease characterized by chronic relapsing intestinal inflammation, presenting as Crohn's Disease (CD, OMIM #266600) or Ulcerative Colitis (UC, OMIM 191390). The prevalence of IBD is increased in individuals with other autoimmune conditions, particularly ankylosing spondylitis, psoriasis, sclerosing cholangitis, and multiple sclerosis. In particular, patients with CD have an increased risk (about seven-fold) to develop psoriasis during their life-time [6]. In this context, the mapping of a psoriasis susceptibility locus within the region containing CARD15 gene suggests the possibility that this gene is involved in the pathogenesis of other inflammatory disorders. In fact, mutations of CARD15 were also found in Blau syndrome (ACUG, OMIM #186580), a rare autosomal dominant disorder characterized by early-onset granulomatous arthritis, uveitis, and skin rash with camptodactyly [12]. The possibility that CARD15 is involved in psoriasis has been preliminarily excluded by Nair et al. [13], who analysed a cohort of psoriatic trios and failed to observe preferential transmission of the penetrant CARD15 allele 3020insC. In order to confirm and extend this result, we analysed a dataset of Italian patients and controls. We examined the distribution of the 3020insC allele and of two additional variants (G908R and R702W), showing independent association to CD [7, 9].

Materials and methods

Ninety psoriatic patients and 160 healthy volunteers were recruited at the Department of Dermatology, "Tor Vergata" University of Rome. All subjects granted their informed consent for participating in this study. In all cases consensus diagnosis of the disease was assessed by two expert dermatologists, based on established clinical criteria [2]. Genomic DNA was extracted from peripheral blood lymphocytes by standard phenol-chloroform extraction. PCR amplification of CARD15 exon 11 was carried out using the following primers: forward, 5'-CTCACCATTGTATCTTCTTTTC; reverse, 5'-GAATGTCAGAATCAGAAGGG.

PCR was performed in a final volume of 50 mul (2 mM MgCl2, 200 mM dNTPs, 0.2 mM of each primer, 200 ng of genomic DNA, and 1 U of AmpliTaq Gold DNA Polymerase). Cycling was performed with an initial denaturation step at 94° for 10 min to activate AmpliTaq Gold, followed by 35 cycles of 94° for 30 sec, 55° for 30 sec and 72° for 1 min, and a final extension step of 72° for 10 min.

The presence of the 3020insC mutation (+) was assessed by Denaturing High-Performance Liquid Chromatography (DHPLC) and confirmed by direct automated sequencing. The DHPLC conditions were established using the Wave Maker 3.1 software. The experimental run temperature of 60° C was tested by running a wild-type PCR product at the calculated temperature ± 2° C. Heterozygous profiles were identified by visual inspection of the chromatograms (Fig. 1). The genotyping of G908R (also known as SNP12) and R702W (SNP8) variants was performed using the Pyrosequencing technology (PSQ 96 system) [14]. A 130-bp (SNP8) and a 116-bp (SNP12) fragment were amplified in a 50 mul PCR reaction containing 50 ng of genomic DNA, 10 pmol of forward biotinylated and reverse unlabelled primer, 1X PCR Buffer (Perkin-Elmer), 1mM MgCl2, 0.2 nM dNTPs, and 1 Unit of AmpliTaq Gold DNA polymerase.

The PCR primers were the following: SNP8, forward 5'-CTTCCTGGCAGGGCTGTT-3'; SNP8, reverse 5'-GAAGTGCTTGCGGAGGCT-3'; SNP12, forward 5'-CACATATCAGGTACTCACTGACAC-3'; SNP12, reverse 5'-GTGATCACCCAAGGCTTCAG-3'.

Biotinylated PCR products (25 mul) were immobilized on streptavidin-coated paramagnetic beads by a 30 min incubation in 2X binding-washing buffer (10 mM Tris-HCl, 2M NaCl, 1 mM EDTA, 0.1% Tween 20, pH 7.6), at 45° C. Single-stranded DNA was obtained by incubating the immobilized PCR product in 50 mul of 0.5 M NaOH for 1 min and washing the beads once in 100 mul of annealing buffer 1X (20 mM Tris-Acetate and 5 mM MgAc2, pH 7.6). A total of 10 pmol of detection sequence primer (SNP8: 5'-TCTGAGAAGGCCCTG-3' and SNP12: 5'-TCACCCACTCTGTTGC-3'), designed with its 3' end immediately upstream of the splice mutation, was allowed to hybridise to ssDNA in 40 mul of annealing buffer, at 80° C for 2 min, with subsequent cooling down to room temperature. Pyrosequencing was carried out using the PSQ96 instrument and the SNP Reagent kit containing dATPalphaS, dCTP, dGTP, dTTP, enzyme mixture (DNA polymerase, ATP sulfurylase, luciferase and apyrase), and substrate mixture (APS and luciferin) (Fig. 2).

To compare genotypic and allelic frequencies between patients and controls, a Chi-square test was performed.

Results and discussion

The genotypic and allelic frequencies of the three CARD15 variants are shown in Table I. No significant difference in genotypic or allelic frequencies was detected between the two examined sample groups. None of the subjects included in this study carried more than a single mutated allele, with the exception of one psoriatic patient who was found to be homozygous for the SNP R702W and heterozygous for the 3020insC variant. All together, these results allow us to exclude an involvement in psoriasis pathogenesis of the most common CD susceptibility alleles of the CARD15 gene, thereby confirming and extending the results reported by Nair et al. [13]. Although we cannot definitively exclude a role of CARD15 protein in the alteration of immune system observed in psoriasis, our studies reduce the possibility that the clinical concomitance of psoriasis and CD is due to specific alleles of the CARD15 gene.

CONCLUSION

Acknowledgements

This work was supported by grants from Italian Ministry of Health and Ministry of Education and University and Research (MIUR Fondi Centro di Eccellenza). We are grateful to C. Farachi and the Biosense s.r.l. for the useful support and help in set-up the Pyrosequencing technology.

Article accepted on 18/7/02

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